- GORBI 2013 predictions The original GORBI model. Contains newly predicted gene functions for >900 microbial genomes, made with data and method described in (Škunca et al. 2013, PLOS Comp Biol).
- GORBI 2013 + known The original GORBI predictions (Škunca et al. 2013, PLOS Comp Biol), shown alongside the previously known gene functions (as of April 2013).
- GORBI 2015 predictions The newly-predicted gene functions obtained using an updated model that competed in the CAFA2 challenge.
- GORBI 2015 + known The updated GORBI gene function predictions from the CAFA2 challenge, shown alongside the previously known gene functions (as of January 2014).
The precision score is 1-false discovery rate.
The precision score is 1-false discovery rate.
Same method as GORBI 2013, but trained on updated underlying databases of orthologs (OMA) and known GO annotations (GOA).
The confidence is the Random Forest probability score.
The confidence is the Random Forest probability score.
| Taxonomy ID | Taxonomy name | Gene name | ENTREZ Gene ID | UniProt ID | GO | GO name | GORBI precision |
|---|---|---|---|---|---|---|---|
| 83333 | Escherichia coli K-12 | 945102 | GO:0030554 | adenyl nucleotide binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0009166 | nucleotide catabolism | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0000910 | cytokinesis | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0046677 | response to antibiotic | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0006200 | ATP catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0051173 | positive regulation of nitrogen compound metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0032559 | adenyl ribonucleotide binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0009259 | ribonucleotide metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0010557 | positive regulation of macromolecule biosynthetic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0009056 | catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0070887 | cellular response to chemical stimulus | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0043565 | sequence-specific DNA binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0016887 | ATPase activity | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0009146 | purine nucleoside triphosphate catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0000920 | Known annot. | |||
| 83333 | Escherichia coli K-12 | 945102 | GO:0044459 | plasma membrane part | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0050789 | regulation of biological process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0031326 | regulation of cellular biosynthetic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0009203 | ribonucleoside triphosphate catabolism | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0005524 | ATP binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0006950 | response to stress | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0051716 | cellular response to stimulus | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0035639 | purine ribonucleoside triphosphate binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0009891 | positive regulation of biosynthetic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0016070 | RNA metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0009141 | nucleoside triphosphate metabolism | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0072523 | purine-containing compound catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0019222 | regulation of metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0009166 | nucleotide catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0000166 | nucleotide binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0046483 | heterocycle metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0006195 | purine nucleotide catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0051171 | regulation of nitrogen compound metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0032555 | purine ribonucleotide binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0009207 | purine ribonucleoside triphosphate catabolism | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0008094 | DNA-dependent ATPase activity | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0065009 | regulation of molecular function | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0043085 | positive regulation of catalytic activity | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0010556 | regulation of macromolecule biosynthetic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0009144 | purine nucleoside triphosphate metabolism | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:2001141 | regulation of RNA biosynthetic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0044281 | small molecule metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0048522 | positive regulation of cellular process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0031325 | positive regulation of cellular metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0009203 | ribonucleoside triphosphate catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0005515 | protein binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0006753 | nucleoside phosphate metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0051301 | cell division | Known annot. | ||
| 83333 | Escherichia coli K-12 | 945102 | GO:0034655 | nucleobase-containing compound catabolic process | Known annot. |