GORBI: Gene Ontology at Rudjer Boskovic Institute

GORBI 2013 predictions

The original GORBI model. Contains newly predicted gene functions for >900 microbial genomes, made with data and method described in (Škunca et al. 2013, PLOS Comp Biol).

The precision score is 1-false discovery rate.

GORBI 2013 + known

The original GORBI predictions (Škunca et al. 2013, PLOS Comp Biol), shown alongside the previously known gene functions (as of April 2013).

The precision score is 1-false discovery rate.

GORBI 2015 predictions

The newly-predicted gene functions obtained using an updated model that competed in the CAFA2 challenge.

Same method as GORBI 2013, but trained on updated underlying databases of orthologs (OMA) and known GO annotations (GOA).

The confidence is the Random Forest probability score.

GORBI 2015 + known

The updated GORBI gene function predictions from the CAFA2 challenge, shown alongside the previously known gene functions (as of January 2014).

The confidence is the Random Forest probability score.

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Taxonomy ID	Taxonomy name	Gene name	ENTREZ Gene ID	UniProt ID	GO	GO name	Confidence score
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0044270	cellular nitrogen compound catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009261	ribonucleotide catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0006195	purine nucleotide catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009141	nucleoside triphosphate metabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0046700	heterocycle catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0019439	aromatic compound catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009154	purine ribonucleotide catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009205	purine ribonucleoside triphosphate metabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0046128	purine ribonucleoside metabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009144	purine nucleoside triphosphate metabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009166	nucleotide catabolism	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0044248	cellular catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009259	ribonucleotide metabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009119	ribonucleoside metabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009150	purine ribonucleotide metabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0042454	ribonucleoside catabolism	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009203	ribonucleoside triphosphate catabolism	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009143	nucleoside triphosphate catabolism	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0019693	ribose phosphate metabolism	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009166	nucleotide catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009207	purine ribonucleoside triphosphate catabolism	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0006163	purine nucleotide metabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0046434	organophosphate catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009117	nucleotide metabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009146	purine nucleoside triphosphate catabolism	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0042454	ribonucleoside catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009203	ribonucleoside triphosphate catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0016787	hydrolase activity	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0006753	nucleoside phosphate metabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009143	nucleoside triphosphate catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0019693	ribose phosphate metabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009164	nucleoside catabolism	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009207	purine ribonucleoside triphosphate catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0006152	purine nucleoside catabolism	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0046130	purine ribonucleoside catabolism	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009116	nucleoside metabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009146	purine nucleoside triphosphate catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0042278	purine nucleoside metabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009199	ribonucleoside triphosphate metabolism	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009141	nucleoside triphosphate metabolism	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009164	nucleoside catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0034655	nucleobase-containing compound catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009205	purine ribonucleoside triphosphate metabolism	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0006152	purine nucleoside catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0046130	purine ribonucleoside catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009056	catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0009144	purine nucleoside triphosphate metabolism	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0006184	GTP catabolic process	Known annot.
83333	Escherichia coli K-12	rsgA	948674	P39286	GO:0046039	GTP metabolic process	Known annot.

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