- GORBI 2013 predictions The original GORBI model. Contains newly predicted gene functions for >900 microbial genomes, made with data and method described in (Škunca et al. 2013, PLOS Comp Biol).
- GORBI 2013 + known The original GORBI predictions (Škunca et al. 2013, PLOS Comp Biol), shown alongside the previously known gene functions (as of April 2013).
- GORBI 2015 predictions The newly-predicted gene functions obtained using an updated model that competed in the CAFA2 challenge.
- GORBI 2015 + known The updated GORBI gene function predictions from the CAFA2 challenge, shown alongside the previously known gene functions (as of January 2014).
The precision score is 1-false discovery rate.
The precision score is 1-false discovery rate.
Same method as GORBI 2013, but trained on updated underlying databases of orthologs (OMA) and known GO annotations (GOA).
The confidence is the Random Forest probability score.
The confidence is the Random Forest probability score.
| Taxonomy ID | Taxonomy name | Gene name | ENTREZ Gene ID | UniProt ID | GO | GO name | Confidence score |
|---|---|---|---|---|---|---|---|
| 83333 | Escherichia coli K-12 | 948695 | GO:0044281 | small molecule metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0009127 | purine nucleoside monophosphate biosynthetic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0071704 | organic substance metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0009168 | purine ribonucleoside monophosphate biosynthesis | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:1901363 | heterocyclic compound binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0036094 | small molecule binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0006974 | response to DNA damage stimulus | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:1901564 | Known annot. | |||
| 83333 | Escherichia coli K-12 | 948695 | GO:0009161 | ribonucleoside monophosphate metabolism | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0097159 | organic cyclic compound binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0044763 | Known annot. | |||
| 83333 | Escherichia coli K-12 | 948695 | GO:1901659 | Known annot. | |||
| 83333 | Escherichia coli K-12 | 948695 | GO:0009127 | purine nucleoside monophosphate biosynthesis | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0009167 | purine ribonucleoside monophosphate metabolism | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0004019 | adenylosuccinate synthase activity | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:1901362 | organic cyclic compound biosynthetic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0035639 | purine ribonucleoside triphosphate binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0006950 | response to stress | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:1901360 | Known annot. | |||
| 83333 | Escherichia coli K-12 | 948695 | GO:0046085 | adenosine metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0009161 | ribonucleoside monophosphate metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0090407 | organophosphate biosynthetic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0006167 | AMP biosynthetic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0044711 | Known annot. | |||
| 83333 | Escherichia coli K-12 | 948695 | GO:1901657 | Known annot. | |||
| 83333 | Escherichia coli K-12 | 948695 | GO:0009126 | purine nucleoside monophosphate metabolism | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0051716 | cellular response to stimulus | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0009167 | purine ribonucleoside monophosphate metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0001883 | purine nucleoside binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:1901293 | nucleoside phosphate biosynthetic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:1901265 | Known annot. | |||
| 83333 | Escherichia coli K-12 | 948695 | GO:0046033 | AMP metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0009156 | ribonucleoside monophosphate biosynthetic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0072522 | purine-containing compound biosynthetic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0015949 | nucleobase-containing small molecule interconversion | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0044710 | Known annot. | |||
| 83333 | Escherichia coli K-12 | 948695 | GO:0009126 | purine nucleoside monophosphate metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:1901576 | Known annot. | |||
| 83333 | Escherichia coli K-12 | 948695 | GO:0050896 | response to stimulus | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:1901137 | carbohydrate derivative biosynthetic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0033554 | cellular response to stress | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:1901135 | Known annot. | |||
| 83333 | Escherichia coli K-12 | 948695 | GO:0044699 | single-organism process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0009156 | ribonucleoside monophosphate biosynthesis | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0072521 | purine-containing compound metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0009168 | purine ribonucleoside monophosphate biosynthetic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0044208 | Known annot. | |||
| 83333 | Escherichia coli K-12 | 948695 | GO:1901566 | Known annot. | |||
| 83333 | Escherichia coli K-12 | 948695 | GO:0000287 | magnesium ion binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 948695 | GO:0097367 | carbohydrate derivative binding | Known annot. |