GORBI: Gene Ontology at Rudjer Boskovic Institute

GORBI 2013 predictions

The original GORBI model. Contains newly predicted gene functions for >900 microbial genomes, made with data and method described in (Škunca et al. 2013, PLOS Comp Biol).

The precision score is 1-false discovery rate.

GORBI 2013 + known

The original GORBI predictions (Škunca et al. 2013, PLOS Comp Biol), shown alongside the previously known gene functions (as of April 2013).

The precision score is 1-false discovery rate.

GORBI 2015 predictions

The newly-predicted gene functions obtained using an updated model that competed in the CAFA2 challenge.

Same method as GORBI 2013, but trained on updated underlying databases of orthologs (OMA) and known GO annotations (GOA).

The confidence is the Random Forest probability score.

GORBI 2015 + known

The updated GORBI gene function predictions from the CAFA2 challenge, shown alongside the previously known gene functions (as of January 2014).

The confidence is the Random Forest probability score.

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Taxonomy ID	Taxonomy name	Gene name	ENTREZ Gene ID	UniProt ID	GO	GO name	Confidence score
83333	Escherichia coli K-12	ispU	944874	P60472	GO:1901576		Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0044038	cell wall macromolecule biosynthetic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0000287	magnesium ion binding	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0006720	isoprenoid metabolic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0048869	cellular developmental process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0071554	cell wall organization or biogenesis	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0016043	cellular component organization	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0044763		Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0042546	cell wall biogenesis	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0044283	small molecule biosynthetic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0006023	aminoglycan biosynthesis	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0008610	lipid biosynthetic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0051128	regulation of cellular component organization	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0008834		Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0022604	regulation of cell morphogenesis	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:1901566		Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0044036	cell wall macromolecule metabolic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0000270	peptidoglycan metabolic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0006629	lipid metabolic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0048856	anatomical structure development	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0009653	anatomical structure morphogenesis	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0070589	cellular component macromolecule biosynthetic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0044711		Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0034645	cellular macromolecule biosynthetic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0044281	small molecule metabolic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0006022	aminoglycan metabolism	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0008360	regulation of cell shape	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0050794	regulation of cellular process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:1901137	carbohydrate derivative biosynthetic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0022603	regulation of anatomical structure morphogenesis	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:1901564		Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0006066	alcohol metabolic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0009273	peptidoglycan-based cell wall biogenesis	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0065008	regulation of biological quality	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0044710		Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0032989	cellular component morphogenesis	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:1901617		Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0044255	cellular lipid metabolic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0004659	prenyltransferase activity	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0008299	isoprenoid biosynthetic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0050793	regulation of developmental process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0071840	cellular component organization or biogenesis	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:1901135		Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0006024	glycosaminoglycan biosynthetic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0046165	alcohol biosynthetic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0009252	peptidoglycan biosynthetic process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0065007	biological regulation	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0016094		Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:0032502	developmental process	Known annot.
83333	Escherichia coli K-12	ispU	944874	P60472	GO:1901615		Known annot.

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