- GORBI 2013 predictions The original GORBI model. Contains newly predicted gene functions for >900 microbial genomes, made with data and method described in (Škunca et al. 2013, PLOS Comp Biol).
- GORBI 2013 + known The original GORBI predictions (Škunca et al. 2013, PLOS Comp Biol), shown alongside the previously known gene functions (as of April 2013).
- GORBI 2015 predictions The newly-predicted gene functions obtained using an updated model that competed in the CAFA2 challenge.
- GORBI 2015 + known The updated GORBI gene function predictions from the CAFA2 challenge, shown alongside the previously known gene functions (as of January 2014).
The precision score is 1-false discovery rate.
The precision score is 1-false discovery rate.
Same method as GORBI 2013, but trained on updated underlying databases of orthologs (OMA) and known GO annotations (GOA).
The confidence is the Random Forest probability score.
The confidence is the Random Forest probability score.
| Taxonomy ID | Taxonomy name | Gene name | ENTREZ Gene ID | UniProt ID | GO | GO name | GORBI precision |
|---|---|---|---|---|---|---|---|
| 83333 | Escherichia coli K-12 | 944786 | GO:0044281 | small molecule metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0009207 | purine ribonucleoside triphosphate catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0000166 | nucleotide binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0006461 | protein complex assembly | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0071822 | protein complex subunit organization | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0017076 | purine nucleotide binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0032561 | guanyl ribonucleotide binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0009144 | purine nucleoside triphosphate metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0043093 | Known annot. | |||
| 83333 | Escherichia coli K-12 | 944786 | GO:0043623 | cellular protein complex assembly | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0009199 | ribonucleoside triphosphate metabolism | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0051258 | protein polymerization | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0016043 | cellular component organization | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0005515 | protein binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0009117 | nucleotide metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0071844 | cellular component assembly at cellular level | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0032153 | cell division site | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0034655 | nucleobase-containing compound catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0009150 | purine ribonucleotide metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0044270 | cellular nitrogen compound catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0009205 | purine ribonucleoside triphosphate metabolism | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0000003 | reproduction | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0006195 | purine nucleotide catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0070271 | protein complex biogenesis | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0009143 | nucleoside triphosphate catabolism | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0032505 | Known annot. | |||
| 83333 | Escherichia coli K-12 | 944786 | GO:0032555 | purine ribonucleotide binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0043234 | protein complex | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0009199 | ribonucleoside triphosphate metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0046700 | heterocycle catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0009261 | ribonucleotide catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0003924 | GTPase activity | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0009056 | catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0071842 | cellular component organization at cellular level | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0022607 | cellular component assembly | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0034622 | cellular macromolecular complex assembly | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0009146 | purine nucleoside triphosphate catabolism | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0044248 | cellular catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0009205 | purine ribonucleoside triphosphate metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0006184 | GTP catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0065003 | macromolecular complex assembly | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0016817 | hydrolase activity, acting on acid anhydrides | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0009143 | nucleoside triphosphate catabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0019954 | Known annot. | |||
| 83333 | Escherichia coli K-12 | 944786 | GO:0032553 | ribonucleotide binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0042802 | identical protein binding | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0009166 | nucleotide catabolism | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0046483 | heterocycle metabolic process | Known annot. | ||
| 83333 | Escherichia coli K-12 | 944786 | GO:0009259 | ribonucleotide metabolic process | Known annot. |